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Products Portfolio
Biosof's
customized sequence analysis solutions build on our expertise and
our extensive portfolio. Our
products portfolio represents a wide array of state-of-the-art
computational sequence analysis tools and is the result of decades
of cumulative research. To get further details about Biosof's
algorithms and databases please email sales@bio-sof.com
Sequence Analysis Software
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PredictProtein
- One of the most widely used internet server for protein
structure prediction. PredictProtein returns predictions of
secondary structure, solvent accessibility, transmembrane
helices, multiple sequence alignments, sequence motifs,
low-complexity regions, nuclear localization signals, regions
lacking regular structure and globular regions, coiled-coil
regions, structural switch regions, disulfide-bonds,
sub-cellular localization, and functional annotations.
Additional analysis includes fold recognition by
prediction-based threading, domain assignments, predictions of
transmembrane strands and inter-residue contacts. Try
PredictProtein at http://www.predictprotein.org,
read the brochure or contact us
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SNAP - SNAP is a neural-network based
method that uses in silico derived protein information (e.g.
secondary structure, conservation, solvent accessibility, etc.)
in order to make predictions regarding functionality of mutated
proteins. The network takes protein sequences and lists of
mutants as input, returning a score for each substitution. These
scores can then be translated into binary predictions of effect
(present/absent) and reliability indices (RI). SNAP returns its
results to the user via e-mail. Try
SNAP online. Read the brochure.
For further information contact
us
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Combined system for the prediction of
sub-cellular localization through homology-transfer (LOChom*),
automated text analysis of SWISS-PROT keywords (LOCkey*), neural
network-based (LOCnet*) and SVM-based predictions (LOCsvm*), and
combinations of methods specialized on “shuttling
sequences” (PredictNLS*, SignalP, ChloroP, ER_GolgiDB*). More
information . For licensing questions contact us
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PROFsec
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PROFphd
is a world renowned suite of protein structure and function
analyses tools. The secondary structure and solvent
accessibility predictor utilizes a specialized neural network
and provides up to 75% accuracy for homology based profiles. More
information . For licensing questions contact us
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ISIS/ DISIS
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Prediction of residues
involved in external protein-protein and protein-DNA
interactions. More
information . For licensing questions contact us
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PredictNLS
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Interactive assessment of
selectivity and sensitivity for nuclear localization signals. More
information . For licensing questions contact us
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METAdisorder
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a novel META-Disorder
prediction method that molds various sources of information
predominantly obtained from orthogonal prediction methods, to
significantly improve in performance over its constituents. In
sustained cross-validation, MD not only outperforms its origins,
but it also compares favorably to other state-of-the-art
prediction methods in a variety of tests. More
information . For licensing questions contact us
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NLProt
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Automatic identification
of protein names in scientific literature. More
information . For licensing questions contact us
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LOCdb
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Database with annotations of localization
for all eukaryotic proteins in PDB (LOC3D), all structural
genomics targets (LOCtarget), and entirely sequenced prokaryotic
and eukaryotic proteomes (not yet completed). More information
. For licensing questions contact us
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NLSdb
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Database of nuclear localization and
DNA-binding motifs.More
information . For licensing questions contact us
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